Selected Publications

  1. A. Katebi, V. Kohar, M. Lu. (2020) Random Parametric Perturbations of Gene Regulatory Circuit Uncover State Transitions in Cell Cycle. iScience. 23(6): 101150 PDF
  2. D. Ramirez, V. Kohar, M. Lu. (2020) Toward Modeling Context-Specific EMT Regulatory Networks Using Temporal Single Cell RNA-Seq Data. Front Mol Biosci. 7:54 PDF
  3. D. Jia, M. Lu, K.H. Jung, J.H. Park, L. Yu, J. Onuchic, B.A. Kaipparettu, H. Levine. (2019) Elucidating Cancer Metabolic Plasticity by Coupling Gene Regulation with Metabolic Pathways, Proc. Natl. Acad. Sci. U.S.A. 116(9): 3909-18 PDF
  4. V. Kohar and M. Lu. (2018) Role of noise and parametric variation in the dynamics of gene regulatory circuits. NPJ Syst. boil. Appl. 4: 40 PDF
  5. B. Huang*, M. Lu*, D. Jia, E. Ben-Jacob, H. Levine, J. Onuchic. (2017) Interrogating the topological robustness of gene regulatory circuits by randomization. PLoS Comput Biol.13(3):e1005456 (*equal contribution) PDF
  6. L. Yu*, M. Lu*#, D. Jia*, J. Ma, E. Ben-Jacob, H. Levine, K.B. Kaipparettu, J. Onuchic (2017). Modeling the Genetic Regulation of Cancer Metabolism: Interplay Between Glycolysis and Oxidative Phosphorylation. Cancer Res. 77(7): 1564 (*equal contribution, #co-corresponding author) PDF
  7. M. Lu, J. Onuchic and E. Ben-Jacob. (2014). Construction of an Effective Landscape for Multistate Genetic Switches. Phys. Rev. Lett. 113(7):078102 PDF
  8. M. Lu*, M. Jolly*, H. Levine, J. Onuchic and E. Ben-Jacob. (2013). MicroRNA-based regulation of epithelial-hybrid-mesenchymal fate determination. Proc. Natl. Acad. Sci. U.S.A. 110:18144-18149 (*equal contribution) PDF